Mecp2 Disorders

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2021-01-18
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Summary

Clinical characteristics.

The spectrum of MECP2-related phenotypes in females ranges from classic Rett syndrome to variant Rett syndrome with a broader clinical phenotype (either milder or more severe than classic Rett syndrome) to mild learning disabilities; the spectrum in males ranges from severe neonatal encephalopathy to pyramidal signs, parkinsonism, and macroorchidism (PPM-X) syndrome to severe syndromic/nonsyndromic intellectual disability.

  • Females: Classic Rett syndrome, a progressive neurodevelopmental disorder primarily affecting girls, is characterized by apparently normal psychomotor development during the first six to 18 months of life, followed by a short period of developmental stagnation, then rapid regression in language and motor skills, followed by long-term stability. During the phase of rapid regression, repetitive, stereotypic hand movements replace purposeful hand use. Additional findings include fits of screaming and inconsolable crying, autistic features, panic-like attacks, bruxism, episodic apnea and/or hyperpnea, gait ataxia and apraxia, tremors, seizures, and acquired microcephaly.
  • Males: Severe neonatal-onset encephalopathy, the most common phenotype in affected males, is characterized by a relentless clinical course that follows a metabolic-degenerative type of pattern, abnormal tone, involuntary movements, severe seizures, and breathing abnormalities. Death often occurs before age two years.

Diagnosis/testing.

The diagnosis of a MECP2 disorder is established by molecular genetic testing in a female proband with suggestive findings and a heterozygous MECP2 pathogenic variant, and in a male proband with suggestive findings and a hemizygous MECP2 pathogenic variant.

Management.

Treatment of manifestations: Treatment is mainly symptomatic and focuses on optimizing the individual's abilities using a multidisciplinary approach that should also include psychosocial support for family members. Risperidone may help in treating agitation; melatonin can ameliorate sleep disturbances. Treatment of seizures, constipation, gastroesophageal reflux, scoliosis, prolonged QTc, and spasticity as per standard care.

Surveillance: Periodic evaluation by the multidisciplinary team; regular assessment of QTc for evidence of prolongation; regular assessment for scoliosis.

Agents/circumstances to avoid: Drugs known to prolong the QT interval.

Genetic counseling.

MECP2 disorders are inherited in an X-linked manner. More than 99% are simplex cases (i.e., a single occurrence in a family), resulting from a de novo pathogenic variant or possibly from inheritance of the pathogenic variant from a parent who has germline mosaicism. Rarely, a MECP2 variant may be inherited from a heterozygous mother in whom favorable skewing of X-chromosome inactivation results in minimal to no clinical findings. When the mother is a known heterozygote, the risk to her offspring of inheriting the MECP2 variant is 50%. When the pathogenic MECP2 variant has been identified in the family, heterozygote testing for at-risk female relatives, prenatal testing for pregnancies at increased risk, and preimplantation genetic diagnosis are possible. Because of the possibility of parental germline mosaicism, it is appropriate to offer prenatal diagnosis to couples who have had a child with a MECP2 disorder regardless of whether the MECP2 pathogenic variant has been detected in a parent.

Diagnosis

Note: Duplication of MECP2 (ranging from 0.3 to 4 Mb and larger) is associated with the allelic disorder MECP2 duplication syndrome and is not addressed in this GeneReview.

Suggestive Findings in Females

A MECP2 disorder should be suspected/considered in females with the following clinical findings suggestive of MECP2 classic Rett syndrome or variant Rett syndrome (based on clinical diagnostic criteria published by Neul et al [2010] [full text] prior to the widespread availability of molecular genetic testing), or mild learning disabilities.

Clinical findings of MECP2 classic Rett syndrome and variant Rett syndrome

  • Most distinguishing finding: A period of regression (range: ages 1-4 years) followed by recovery or stabilization (range: ages 2-10 years; mean: age 5 years)
  • Main findings
    • Partial or complete loss of acquired purposeful hand skills
    • Partial or complete loss of acquired spoken language or language skill (e.g., babble)
    • Gait abnormalities: impaired (dyspraxic) or absence of ability
    • Stereotypic hand movements including hand wringing/squeezing, clapping/tapping, mouthing, and washing/rubbing automatisms
  • Supportive findings
    • Breathing disturbances when awake
    • Bruxism when awake
    • Impaired sleep pattern
    • Abnormal muscle tone
    • Peripheral vasomotor disturbances
    • Scoliosis/kyphosis
    • Growth retardation
    • Small, cold hands and feet
    • Inappropriate laughing/screaming spells
    • Diminished response to pain
    • Intense eye communication - "eye pointing"
  • Exclusionary findings
    • Brain injury secondary to peri- or postnatal trauma, neurometabolic disease, or severe infection that causes neurologic problems
    • Grossly abnormal psychomotor development in the first six months of life, with early milestones not being met

Clinical findings of MECP2 mild learning disability. Typically mild and non-progressive. Note: Typically, females with mild learning disability are identified through molecular genetic testing following diagnosis of a first-degree relative (e.g., a more significantly affected brother or sister).

Suggestive Findings in Males

MECP2 disorders should be considered in a male with severe neonatal encephalopathy; pyramidal signs, parkinsonism, and macroorchidism (PPM-X) syndrome; or syndromic/nonsyndromic intellectual disability.

Clinical findings of MECP2 severe neonatal encephalopathy

  • Microcephaly
  • Relentless clinical course that follows a metabolic-degenerative type of pattern
  • Abnormal tone
  • Involuntary movements
  • Severe seizures
  • Breathing abnormalities (including central hypoventilation or respiratory insufficiency)

Clinical findings of MECP2 severe intellectual disability (including PPM-X syndrome)

  • Moderate-to-severe intellectual disability
  • Resting tremor
  • Slowness of movements
  • Ataxia
  • PPM-X syndrome: pyramidal signs, parkinsonism, and macroorchidism
  • No seizures or microcephaly
  • Usually normal brain MRI, EEG, EMG, and nerve conduction velocity studies

Establishing the Diagnosis

Female proband. The diagnosis of a MECP2 disorder is usually established in a female proband with suggestive findings and a heterozygous pathogenic variant in MECP2 identified by molecular genetic testing (see Table 1).

Male proband. The diagnosis of a MECP2 disorder is established in a male proband with suggestive findings and a hemizygous pathogenic variant in MECP2 identified by molecular genetic testing (see Table 1).

Molecular genetic testing approaches can include a combination of gene-targeted testing (either single-gene or multigene panel) or comprehensive genomic testing (exome sequencing, exome array, genome sequencing) depending on the phenotype.

Gene-targeted testing requires that the clinician determine which gene(s) are likely involved, whereas genomic testing does not. Because the phenotype of MECP2 disorders is broad, females with the distinctive findings described in Suggestive Findings are likely to be diagnosed using gene-targeted testing (see Option 1), whereas females and males with a phenotype indistinguishable from many other inherited disorders with intellectual disability and/or neonatal encephalopathy are more likely to be diagnosed using genomic testing (see Option 2).

Option 1

When the clinical findings suggest the diagnosis of a MECP2 disorder, molecular genetic testing approaches can include use of single-gene testing or a multigene panel:

  • Single-gene testing. Sequence analysis of MECP2 detects small intragenic deletions/insertions and missense, nonsense, and splice site variants. If no pathogenic variant is found, perform gene-targeted deletion/duplication analysis to detect intragenic deletions or duplications. Note: Lack of amplification by PCR prior to sequence analysis can suggest a putative (multi)exon or whole-gene deletion on the X chromosome in affected males; confirmation requires additional testing by gene-targeted deletion/duplication analysis.
  • Various multigene panels such as Rett/Angelman syndrome panels and more comprehensive childhood-onset epilepsy panels that include MECP2 and other genes of interest (see Differential Diagnosis) are most likely to identify the genetic cause of the condition at the most reasonable cost while limiting identification of variants of uncertain significance and pathogenic variants in genes that do not explain the underlying phenotype. Note: (1) The genes included in the panel and the diagnostic sensitivity of the testing used for each gene vary by laboratory and are likely to change over time. (2) Some multigene panels may include genes not associated with the condition discussed in this GeneReview. (3) In some laboratories, panel options may include a custom laboratory-designed panel and/or custom phenotype-focused exome analysis that includes genes specified by the clinician. (4) Methods used in a panel may include sequence analysis, deletion/duplication analysis, and/or other non-sequencing-based tests. For this disorder a multigene panel that also includes deletion/duplication analysis is recommended (see Table 1).
    For an introduction to multigene panels click here. More detailed information for clinicians ordering genetic tests can be found here.

Option 2

When the phenotype overlaps with many other inherited disorders characterized by intellectual disability and/or neonatal encephalopathy, comprehensive genomic testing (which does not require the clinician to determine which gene[s] are likely involved) is another option. Exome sequencing is most commonly used; genome sequencing is also possible.

If exome sequencing is not diagnostic, exome array (when clinically available) may be considered to detect (multi)exon deletions or duplications that cannot be detected by sequence analysis.

For an introduction to comprehensive genomic testing click here. More detailed information for clinicians ordering genomic testing can be found here.

Table 1.

Molecular Genetic Testing Used in MECP2 Disorders

Gene 1MethodProportion of Probands with a Pathogenic Variant 2 Detectable by Method
MECP2Sequence analysis 3, 490%-95% 5
Gene-targeted deletion/duplication analysis 65%-10% 7, 8
1.

See Table A. Genes and Databases for chromosome locus and protein.

2.

See Molecular Genetics for information on allelic variants detected in this gene.

3.

Sequence analysis detects variants that are benign, likely benign, of uncertain significance, likely pathogenic, or pathogenic. Pathogenic variants may include small intragenic deletions/insertions and missense, nonsense, and splice site variants; typically, exon or whole-gene deletions/duplications are not detected. For issues to consider in interpretation of sequence analysis results, click here.

4.

Lack of amplification by PCR prior to sequence analysis can suggest a putative (multi)exon or whole-gene deletion on the X chromosome in affected males; confirmation requires additional testing by gene-targeted deletion/duplication analysis.

5.

Archer et al [2006], Philippe et al [2006]

6.

Gene-targeted deletion/duplication analysis detects intragenic deletions or duplications. Methods used may include quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and a gene-targeted microarray designed to detect single-exon deletions or duplications. Gene-targeted deletion/duplication testing will detect deletions ranging from a single exon to the whole gene; however, breakpoints of large deletions and/or deletion of adjacent genes (e.g., those described by Hardwick et al [2007]) may not be detected by these methods.

7.

The sizes of many reported disease-associated deletions are at the upper limits of detection by sequence analysis and the lower limits of detection by gene-targeted deletion/duplication analysis; therefore, the proportion of pathogenic variants detected by either method depends on the methods used by a laboratory.

8.

Archer et al [2006], Pan et al [2006], Philippe et al [2006], Hardwick et al [2007], Zahorakova et al [2007]

Clinical Characteristics

Clinical Description

In females the spectrum of MECP2-related phenotypes ranges from classic Rett syndrome, to variant Rett syndrome (either milder or more severe than classic Rett syndrome), to mild learning disabilities. In males the spectrum ranges from severe neonatal encephalopathy, to pyramidal signs, parkinsonism, and macroorchidism (PPM-X) syndrome, to severe syndromic/nonsyndromic intellectual disability.

MECP2 Disorders in Females

Table 2.

Features of MECP2 Disorders in Females

PhenotypeFeature% of Persons with Feature
MECP2 classic Rett syndromeRegression followed by recovery or stabilization99%
Deceleration of head growth80%
Gait abnormalities99%
Seizures60%-80%
Hand stereotypies & loss of purposeful hand skills100% 1
Absence of speech; high-pitched crying99%
Cold extremities99%
Irregular breathing99%
Variant Rett syndromeRegression followed by recovery or stabilization99%
Gait abnormalities80%-99%
Sleep disturbences80%-99%
seizures6%-80%
Hand stereotypies & loss of purposeful hand skills97.3%
Breathing irregularities80%-99%
Agitation80%-99%

Gold et al [2018], Einspieler & Marschik [2019], Stallworth et al [2019]

1.

Stallworth et al [2019]; 44% showed different patterns including hand wringing, washing, clapping, and tapping.

MECP2 classic Rett syndrome. Most individuals with classic Rett syndrome are female; however, males meeting the clinical criteria for classic Rett syndrome who have a 47,XXY karyotype [Hoffbuhr et al 2001, Leonard et al 2001, Schwartzman et al 2001] and postzygotic MECP2 variants resulting in somatic mosaicism have been described [Clayton-Smith et al 2000, Topçu et al 2002].

Although early development is reportedly normal in children with classic Rett syndrome, parents – in retrospect – often identify subtle differences compared to unaffected sibs. Most (but not all) affected children have acquired microcephaly; stereotypic hand movements and breathing irregularities are seen in the majority.

Variant Rett syndrome. Females with variant Rett syndrome exhibit a broader spectrum of clinical features than those observed in classic Rett syndrome. At the more severe end of the spectrum, development is delayed from very early infancy; congenital hypotonia and infantile spasms are also seen. At the milder end of the spectrum, regression is less dramatic and intellectual disability is much less severe; some speech may be preserved.

Mild learning disabilities. In rare instances, females with a pathogenic MECP2 variant may only exhibit mild learning disabilities or some autistic features, presumably as a consequence of favorable skewing of X-chromosome inactivation. When there is no regression phase and no characteristic hand stereotypes, the clinical course differs from that of classic and variant Rett syndrome.

MECP2 Disorders in Males

Table 3.

Features of MECP2 Disorders in Males

PhenotypeFeature% of Persons with Feature
PresentAbsentNot
reported
MECP2-related
severe neonatal
encephalopathy 1
Normal birth parameters71%29%
Head growth deceleration / microcephaly94%5.8%
Hypotonia &/or feeding difficulties in infancy82.4%17.6%
Hypertonia of extremities52.9%11.8%35.3%
Movement disorder, e.g., myoclonus, tremors, & dystonia58.8%17.7%23.5%
Mild cerebral atrophy18%35%47%
Polymicrogyria5.9%23.5%70.6%
Poor head control35%12%53%
Seizures58.8%17.7%23.5%
Severe development delay82.4%17.6%
Irregular breathing / sleep apnea47.1%29.4%23.5%
Gastroesophageal reflux35.3%64.7%
EEG abnormality88.2%5.9%5.9%
Pyramidal signs,
parkinsonism, and
macroorchidism
(PPM-X syndrome2
Psychosis67.6%10.8%21.6%
Pyramidal signs46%2.7%51.3%
Macroorchidism19%81%
Intellectual disability50%50%
Parkinsonism2.7%97.3%
Progressive spasticity67.6%32.4%
Delayed development54%46%
Speech difficulties50%50%
Seizures2.7%
Bilateral juvenile cataract2.7%
Scoliosis or kyphosis10.8%
Large ears8.1%
Movement disorders32.4%
Apraxia2.7%36%
Seizures8.1%91.9%
Dysmorphic features5.4%