Dihydrolipoamide Dehydrogenase Deficiency

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2021-01-18
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Summary

Clinical characteristics.

The phenotypes of dihydrolipoamide dehydrogenase (DLD) deficiency are an overlapping continuum that ranges from early-onset neurologic manifestations to adult-onset liver involvement and, rarely, a myopathic presentation. Early-onset DLD deficiency typically manifests in infancy as hypotonia with lactic acidosis. Affected infants frequently do not survive their initial metabolic decompensation, or die within the first few years of life during a recurrent metabolic decompensation. Children who live beyond the first two to three years frequently exhibit growth deficiencies and residual neurologic deficits (intellectual disability, spasticity, ataxia, and seizures). In contrast, isolated liver involvement can present as early as the neonatal period and as late as the third decade. Evidence of liver injury/failure is preceded by nausea and emesis and frequently associated with encephalopathy and/or coagulopathy. Acute metabolic episodes are frequently associated with lactate elevations, hyperammonemia, and hepatomegaly. With resolution of the acute episodes affected individuals frequently return to baseline with no residual neurologic deficit or intellectual disability. Liver failure can result in death, even in those with late-onset disease. Individuals with the myopathic presentation may experience muscle cramps, weakness, and an elevated creatine kinase.

Diagnosis/testing.

The diagnosis of dihydrolipoamide dehydrogenase deficiency (DLD) is established in a proband with suggestive clinical and supportive laboratory findings and/or by identification of biallelic pathogenic variants in DLD.

Management.

Treatment of manifestations:

  • Routine daily treatment for those with the early-onset neurologic presentation: branched-chain amino acid (BCAA)-free powder formula with 2-3 g/kg/day natural protein; ketogenic/high-fat diet; dichloroacetate (DCA) supplementation (50-75 mg/kg/day); feeding therapy and consideration of gastrostomy tube for persistent feeding issues; standard treatment for developmental delay / intellectual disability, cardiac dysfunction, and vision impairment / optic atrophy.
  • Acute inpatient treatment for those with early-onset neurologic presentation: address any precipitating factors (infection, fasting, medications); D10 (half or full-normal saline) with age-appropriate electrolytes; consideration of bicarbonate therapy for those with severe metabolic acidosis; withholding of protein for a maximum of 24 hours; consideration of renal replacement therapyies; total protein intake 2-3.5 g/kg/day as BCAA-free amino acids; isoleucine and valine supplements; maintain serum osmolality within the normal reference range; levocarnitine (IV or PO) 50-100 mg/kg/day divided three times per day; continuation of DCA; standard therapy for seizures.
  • For hepatic presentation: removal or treatment of precipitating factors; dextrose-containing IV fluids (6-8 mg/kg/min) with age-appropriate electrolytes and/or frequent feedings; consider correction of metabolic acidosis using sodium bicarbonate; consideration of DCA and/or dialysis; consideration of fresh frozen plasma for coagulopathy.
  • For the myopathic presentation: At least one affected individual with severe exercise intolerance responded well to riboflavin supplementation (220 mg/day).

Prevention of primary manifestations: No compelling evidence exists for the prevention of acute episodes, despite multiple attempted dietary strategies and medications. Provide protein intake at or around recommended dietary allowance and titrate based on growth and plasma amino acid values; supplementation with levocarnitine, if deficient.

Prevention of secondary complications: DCA has been associated with the development of peripheral neuropathy; thus, individuals receiving this medication require close monitoring.

Surveillance: Measurement of growth parameters and evaluation of nutritional status and safety of oral intake at each visit; full amino acid profile (from plasma or filter paper) weekly or twice weekly in rapidly growing infants and routinely in older individuals; at least monthly visit with a metabolic specialist in infancy; assessment of developmental milestones at each visit or as needed; physical examination and/or ultrasound to assess liver size, measurement of liver transaminases and liver synthetic function, and assessment for peripheral neuropathy at each visit; echocardiogram at least annually or based on clinical status; ophthalmologic evaluation as clinically indicated.

Agents/circumstances to avoid: Fasting, catabolic stressors, and extremes of dietary intake until dietary tolerance/stressors are identified; liver-toxic medications.

Evaluation of relatives at risk: Testing of all at-risk sibs of any age is warranted to allow for early diagnosis and treatment of DLD deficiency and to avoid risk factors that may precipitate an acute event. For at-risk newborn sibs when molecular genetic prenatal testing was not performed: in parallel with NBS either test for the familial DLD pathogenic variants or measure plasma lactate, plasma amino acids, and urine organic acids.

Genetic counseling.

DLD deficiency is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the DLD pathogenic variants in the family are known.

Diagnosis

Dihydrolipoamide dehydrogenase (DLD) functions as the E3 subunit of three mitochondrial enzyme complexes: branched-chain alpha-ketoacid dehydrogenase (BCKDH) complex, α-ketoglutarate dehydrogenase (αKGDH) complex, and pyruvate dehydrogenase (PDH) complex [Chuang et al 2013]. The E3 subunit is responsible for the reoxidation of the reduced lipoyl moiety of the E2 subunit. Although DLD also functions as the L protein of the glycine cleavage system, pathogenic variants in DLD do not appear to impair the function of this system in vivo.

The phenotypic spectrum of DLD deficiency includes an early-onset neurologic presentation, a primarily hepatic presentation, and a primarily myopathic presentation.

No formal clinical diagnostic criteria have been established for dihydrolipoamide dehydrogenase (DLD) deficiency.

Suggestive Findings

The diagnosis of dihydrolipoamide dehydrogenase (DLD) deficiency should be suspected in individuals with the following clinical and supportive laboratory findings.

Clinical findings

  • Neurologic. Early-onset hypotonia, lethargy, and emesis
    • In untreated infants, manifestations progress to deepening encephalopathy (lethargy, tone abnormalities, feeding difficulties, decreased level of alertness, and occasionally seizures) and eventual death.
    • Neurologic impairment presents in those who survive the first year of life.
  • Hepatic. Recurrent liver injury/failure frequently preceded by nausea and emesis
    • Age of onset ranges from the neonatal period to the third decade.
    • Individuals with the hepatic form typically have normal intellect with no residual neurologic deficit between acute metabolic episodes unless neurologic damage has occurred.
  • Myopathic. Muscle cramps, weakness, and an elevated creatine kinase
    While muscle involvement is the main feature in previously reported individuals, additional findings include intermittent acidosis and hepatic involvement [Quintana et al 2010, Carrozzo et al 2014].

Supportive laboratory findings

  • Newborn screening (NBS). Citrulline is elevated on NBS dried blood spot [Haviv et al 2014, Quinonez et al 2014].
    Note: (1) Newborn screening has failed to identify asymptomatic individuals with DLD deficiency when either dried blood spot citrulline or leucine is used as a primary screening analyte; (2) Individuals with an early-onset or hepatic presentation only occasionally have biochemical evidence of dysfunctional branched chain amino acid (BCAA) metabolism (i.e., elevations of allo-isoleucine and branched chain ketoacids; see Table 1), making leucine an unreliable marker for screening; (3) DLD deficiency is not listed as a condition on the differential diagnosis for an increased citrulline on the ACMG ACT Sheet and is not currently reported on most NBS panels.
  • Abnormal laboratory findings typically associated with the neurologic presentation:
    • Metabolic acidosis. Arterial pH <7.35 or venous pH <7.32 and serum bicarbonate <22 mmol/L in children and adults or <17 mmol/L in neonates
    • Hypoglycemia. <40 mg/dL (<2.2 mmol/L)
    • Other metabolic abnormalities listed in Table 1
  • Laboratory findings typically associated with the hepatic presentation:
    • Elevated lactate level (>2.2 µmol/L)
    • Isolated elevated transaminases to fulminant hepatic failure
    • Absence of other metabolic abnormalities (See Table 1.)
  • Laboratory findings typically associated with the myopathic presentation:
    • Normal-to-elevated serum creatinine kinase (CK) level, up to 20 times the normal range during acute episodes (<192 U/L) [Carrozzo et al 2014]
    • Occasionally elevated transaminases, lactate, and other metabolic abnormalities (See Table 1.)

Table 1.

Metabolic Abnormalities in DLD Deficiency by Presentation

MetabolitePresentationNormal
NeurologicHepaticMyopathic
Plasma lactateNormal to ↑<2.2 µmol/L
Urine α-ketoglutarateNormal to ↑Typically normalNormal to ↑
  • Neonates: 4-524 mmol/mol creatinine
  • Children: 36-117 mmol/mol creatinine
  • Adults: 4-74 mmol/mol creatinine
Urine branched-chain ketoacidsAbsent to ↑Typically absentAbsent to ↑
  • Neonates: <7 mmol/mol creatinine
  • All other ages: not detectable
Plasma leucineNormal to ↑Typically normalNormal to ↑
  • Infants: 46-147 µmol/L
  • Children: 30-246 µmol/L
  • Adolescents-adults: 86-206 µmol/L
Plasma isoleucineNormal to ↑Typically normalNormal to ↑
  • Infants: 12-77 µmol/L
  • Children: 6-122 µmol/L
  • Adolescents-adults: 34-106 µmol/L
Plasma valineNormal to ↑Typically normalNormal to ↑
  • Infants: 79-217 µmol/L
  • Children: 132-480 µmol/L
  • Adolescents-adults: 155-343 µmol/L
Plasma allo-isoleucineNormal to ↑Typically normalNormal to ↑<5 µmol/L

Establishing the Diagnosis

The diagnosis of dihydrolipoamide dehydrogenase deficiency (DLD) is established in a proband with suggestive clinical and supportive laboratory findings (see Table 1) AND/OR by identification of biallelic pathogenic variants in DLD (see Table 2).

Note: The presence of decreased DLD enzymatic activity in fibroblasts, lymphocytes, or liver tissue can also be used to establish the diagnosis but is not recommended as a first-line test, given the general availability of molecular genetic testing.

When laboratory findings suggest the diagnosis of DLD, molecular genetic testing approaches can include single-gene testing or use of a multigene panel.

Single-gene testing. Sequence analysis of DLD is performed first to detect small intragenic deletions/insertions and missense, nonsense, and splice site variants.

  • Targeted analysis for the c.685G>T (p.Gly229Cys) pathogenic variant may be considered first in individuals of Ashkenazi Jewish ancestry.
  • Depending on the sequencing method used, single-exon, multiexon, or whole-gene deletions/duplications may not be detected.
  • If only one or no variant is detected by the sequencing method used, the gene-targeted deletion/duplication analysis to detect exon and whole-gene deletions or duplications may be considered.

A multigene panel that includes DLD and other genes of interest (see Differential Diagnosis) is most likely to identify the genetic cause of the condition at the most reasonable cost while limiting identification of variants of uncertain significance and pathogenic variants in genes that do not explain the underlying phenotype. Note: (1) The genes included in the panel and the diagnostic sensitivity of the testing used for each gene vary by laboratory and are likely to change over time. (2) Some multigene panels may include genes not associated with the condition discussed in this GeneReview. (3) In some laboratories, panel options may include a custom laboratory-designed panel and/or custom phenotype-focused exome analysis that includes genes specified by the clinician. (4) Methods used in a panel may include sequence analysis, deletion/duplication analysis, and/or other non-sequencing-based tests.

For an introduction to multigene panels click here. More detailed information for clinicians ordering genetic tests can be found here.

Table 2.

Molecular Genetic Testing Used in Dihydrolipoamide Dehydrogenase Deficiency

Gene 1MethodProportion of Pathogenic Variants 2 Detectable by Method
DLDSequence analysis 342/43 (98%) 4
Gene-targeted deletion/duplication analysis 5Unknown 6
Targeted analysis for pathogenic variants 7See footnote 8.
1.

See Table A. Genes and Databases for chromosome locus and protein.

2.

See Molecular Genetics for information on allelic variants.

3.

Sequence analysis detects variants that are benign, likely benign, of uncertain significance, likely pathogenic, or pathogenic. Pathogenic variants may include small intragenic deletions/insertions and missense, nonsense, and splice site variants; typically, exon or whole-gene deletions/duplications are not detected. For issues to consider in interpretation of sequence analysis results, click here.

4.

Quintana et al [2010], Brassier et al [2013], Quinonez et al [2013], Carrozzo et al [2014], Haviv et al [2014], Bravo-Alonso et al [2019]

5.

Gene-targeted deletion/duplication analysis detects intragenic deletions or duplications. Methods used may include quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and a gene-targeted microarray designed to detect single-exon deletions or duplications.

6.

No deletions or duplications involving DLD have been reported to cause dihydrolipoamide dehydrogenase deficiency.

7.

Variant panels may differ by laboratory.

8.

The c.685G>T (p.Gly229Cys) pathogenic variant is common in Ashkenazi Jews (see Prevalence).

Clinical Characteristics

Clinical Description

Persons with dihydrolipoamide dehydrogenase (DLD) deficiency exhibit variable phenotypic and biochemical consequences based on the three affected enzyme complexes. While the spectrum of disease ranges from early-onset neurologic manifestations to isolated adult-onset liver involvement, it represents a continuum and differentiation between discretely defined presentations can occasionally be difficult.

Early-Onset Neurologic Presentation

The most frequent clinical finding in early-onset DLD deficiency is that of a hypotonic infant with lactic acidosis (Table 3). Affected infants frequently do not survive their initial metabolic decompensation or die within the first one to two years of life during a recurrent metabolic decompensation.

Children who live beyond the first two to three years frequently exhibit growth deficiencies and residual neurologic deficits including intellectual disability, spasticity (hypertonia and/or hyperreflexia), ataxia, and seizures. Typically, seizures are generalized tonic-clonic and occur during episodes of metabolic decompensation and not during periods when affected individuals are metabolically stable [Quinonez et al 2013]. Medication-refractory epilepsy has been seen in one affected individual with neurologic impairment secondary to metabolic decompensation [Author, personal observation]. Of note, normal intellectual functioning has been reported in individuals with certain genotypes (see Genotype-Phenotype Correlations).

Table 3.

Features of the Early-Onset Neurologic Phenotype

Disease FeaturesFrequency 1%
Clinical presentation 2Hypotonia16/2564
Developmental delay12/2548
Emesis12/2548
Hepatomegaly10/2540
Lethargy8/2532
Seizures7/2528
Spasticity (hypertonia &/or hyperreflexia)7/2528
Leigh syndrome phenotype6/2524
Failure to thrive6/2524
Microcephaly5/2520
Vision impairment4/2516
Ataxia3/2512
Cardiac involvement3/2512
Laboratory abnormalitiesMetabolic acidosis 322/2588
↑ plasma lactate 418/2572
↑ urine α-ketoglutarate 413/2552
Hypoglycemia 512/2548
↑ plasma BCAA 410/2540
↑ transaminases11/2544
↑ urine branched-chain ketoacids 47/2528
Hepatic failure5/2520
↑ plasma allo-isoleucine 44/2516
Low free plasma carnitine 63/2512
Hyperammonemia 74/2516

Includes only individuals biochemically confirmed to have DLD deficiency

BCAA = branched-chain amino acids

1.

Quinonez et al [2013], Bravo-Alonso et al [2019]

2.

Later physical examination and neurologic findings are likely underrepresented, as children with an early-onset presentation frequently die in the first year(s) of life.

3.

Arterial pH <7.35 or venous pH <7.32; serum bicarbonate <22 mmol/L in infants, children, and adults; or <17 mmol/L in neonates

4.

See Table 1.

5.

Glucose <40 mg/dL

6.

Carnitine (free) <38±22

7.

Ammonia >100 µmol/L in neonates or >60 µmol/L in infants, children, and adults

Metabolic phenotype. DLD deficiency is associated with recurrent episodes of metabolic decompensation typically triggered by illness/fever, surgery, fasting, or diet (high in fats and/or protein).

  • Some affected individuals have experienced worsening of clinical status with high-fat diets [Brassier et al 2013], while others have achieved metabolic control with ketogenic diets (see Management).
  • Some individuals with DLD deficiency have features of Leigh syndrome [Quinonez et al 2013]. Leigh syndrome consists of characteristic clinical findings and brain pathology.
    The diagnostic criteria for Leigh syndrome include: (1) progressive neurologic disease with motor and intellectual developmental delay; (2) signs and features of brain stem or basal ganglia disease; (3) elevated lactate levels in the blood or cerebrospinal fluid; and (4) one or more of three features:
    • Characteristic features of Leigh syndrome on neuroradioimaging (symmetric hypodensities in the basal ganglia on computed tomography, or hyperintense lesions on T2-weighted MRI)
    • Typical neuropathologic changes at postmortem examination
    • Typical neuropathology in a similarly affected sib

Liver abnormalities. Hepatomegaly and liver dysfunction/failure (elevated transaminases, synthetic failure) can occur during acute episodes and occasionally are the cause of death.

  • Between acute episodes both liver size and transaminase levels can return to normal.
  • Liver biopsies have shown increased glycogen content and mild fibrosis or fatty, acute necrosis with a Reye syndrome-like appearance.

Cardiac dysfunction. Hypertrophic cardiomyopathy was reported in two affected individuals and "myocardial dysfunction" in one.

Hyperammonemia (≤250 µmol/L) is sometimes observed at the time of initial presentation, although this is typically associated with various degrees of hepatic injury/failure [Quinonez et al 2013, Bravo-Alonso et al 2019].

Vision impairment/optic atrophy can occur, with progression to full blindness reported.

Hepatic Presentation

Affected individuals with a primarily hepatic presentation can develop signs and symptoms as early as the neonatal period and as late as the third decade of life [Brassier et al 2013]. Evidence of liver injury/failure (Table 4) is preceded by nausea and emesis and frequently associated with encephalopathy and/or coagulopathy. Liver failure as a cause of death has been reported in multiple affected individuals, including those who presented later in life. The hepatic manifestations of these individuals are typically only present during acute episodes, while other findings (muscle cramps, behavioral disturbances, and vision loss) have been reported when affected individuals are clinically well.

Table 4.

Features of the Hepatic Phenotype

Disease FeaturesFrequency 1%
Clinical presentationNausea/emesis13/13100
Hepatomegaly9/1369
Hepatic encephalopathy7/1354
Muscle cramps3/1323
Behavioral disturbances1/138
Optic atrophy1/138
Laboratory abnormalities↑ transaminases13/13100
Coagulopathy11/1385
↑ lactate 2